Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
srfCPutative virulence factor; silverDB:etchr01694. (799 aa)    
Predicted Functional Partners:
srfB
Putative virulence effector protein; silverDB:etchr01695.
 
  
 0.981
srfA
Putative virulence effector protein; silverDB:etchr01696.
 
  
 0.980
ETA_22400
Conserved hypothetical protein; silverDB:etchr02228.
  
     0.713
flgN
Flagellar biosynthesis protein; silverDB:etchr02032.
  
     0.706
ETA_32110
Conserved hypothetical protein; silverDB:etchr03197.
  
     0.658
ETA_28490
TetR-family transcriptional regulator; silverDB:etchr02837.
  
     0.644
ydiV
Conserved hypothetical protein YdiV; silverDB:etchr01821.
  
     0.639
ETA_19380
Conserved hypothetical protein; silverDB:etchr01927.
  
     0.636
ETA_30540
Conserved hypothetical protein; silverDB:etchr03041; Belongs to the SUA5 family.
  
     0.595
ETA_17470
Conserved hypothetical protein; silverDB:etchr01736.
  
     0.591
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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