Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ygdRPutative lipoprotein YgdR; silverDB:etchr01910. (77 aa)    
Predicted Functional Partners:
ygdI
Putative lipoprotein YgdI; silverDB:etchr01911.
 
    
0.810
rcsA
Colanic acid capsular biosynthesis activation protein A; Component of the Rcs signaling system, which controls transcription of numerous genes. Binds to DNA to regulate expression of genes.
  
     0.747
ompX
Virulence-related outer membrane protein X; silverDB:etchr02191.
  
     0.741
yqjK
Conserved hypothetical protein YqjK; silverDB:etchr02898.
  
     0.741
yfeC
Putative negative regulator; silverDB:etchr01099.
  
     0.721
yebY
Conserved hypothetical protein YebY; silverDB:etchr01496.
  
     0.721
yecA
Conserved hypothetical protein YecA; silverDB:etchr00407; Belongs to the UPF0149 family.
  
     0.697
tus
DNA replication terminus site-binding protein (Ter protein); silverDB:etchr01751.
  
     0.644
sseB
Enhanced serine sensitivity; silverDB:etchr01013.
  
     0.636
fimF
Minor fimbrial subunit, polypeptide (FimF); silverDB:etchr02853.
  
    0.632
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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