Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dcuSSensor protein; silverDB:etchr01912. (546 aa)    
Predicted Functional Partners:
dcuR
Response regulator in two-component regulatory system with DcuS; silverDB:etchr01913.
 
  
 0.995
barA
Signal transduction histidine-protein kinase BarA; silverDB:etchr02713.
      
 0.549
hpt
Hypoxanthine phosphoribosyltransferase; silverDB:etchr00842; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
      
 0.522
ygdI
Putative lipoprotein YgdI; silverDB:etchr01911.
       0.479
yehU
Putative two-component system sensor kinase; silverDB:etchr00495.
  
   
 0.473
ygdR
Putative lipoprotein YgdR; silverDB:etchr01910.
       0.436
hrpX
HrpX protein (hrp cluster); silverDB:etchr00524.
   
  
 0.434
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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