STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxBThioredoxin reductase; silverDB:etchr02144. (358 aa)    
Predicted Functional Partners:
trxA
silverDB:etchr00194; Belongs to the thioredoxin family.
 
 0.986
ahpC
Putative alkyl hydroperoxide reductase subunit C; silverDB:etchr02530.
  
 
 0.922
sufS
Cysteine desulfurase; Cysteine desulfurases mobilize the sulfur from L-cysteine to yield L-alanine, an essential step in sulfur metabolism for biosynthesis of a variety of sulfur-containing biomolecules. Component of the suf operon, which is activated and required under specific conditions such as oxidative stress and iron limitation. Acts as a potent selenocysteine lyase in vitro, that mobilizes selenium from L- selenocysteine. Selenocysteine lyase activity is however unsure in vivo.
 
 
 0.917
mdeA
Methionine gamma-lyase; silverDB:etchr00841.
   
 
 0.909
trxC
Thioredoxin 2; silverDB:etchr00918; Belongs to the thioredoxin family.
 
 
 0.817
ccmG
Cytochrome c biogenesis protein CcmG (Thiol:disulfide interchange protein DsbE); silverDB:etchr01134.
  
 
 0.785
ETA_24510
Putative thioredoxin-like protein; silverDB:etchr02439.
  
 
 0.781
ETA_17240
Catalase; silverDB:etchr01713; Belongs to the catalase family.
   
 
 0.709
vanB
Vanillate O-demethylase oxidoreductase; silverDB:etchr03325.
   
 
 0.671
metG
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
 
 0.608
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.