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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybjDHypothetical protein YbjD; silverDB:etchr02151. (550 aa)    
Predicted Functional Partners:
hsdR
Type I restriction-modification system, restriction subunit; silverDB:etchr03312.
  
    0.741
hsdS
Type I restriction-modification system, specifity subunit; silverDB:etchr03313.
  
    0.638
ETA_03780
Hypothetical protein; silverDB:etchr00378.
  
    0.636
ETA_17980
Conserved hypothetical protein; silverDB:etchr01787.
   
    0.627
ETA_15280
Conserved hypothetical protein; silverDB:etchr01518; Belongs to the UPF0181 family.
  
     0.602
poxB
Pyruvate dehydrogenase (cytochrome); silverDB:etchr02152; Belongs to the TPP enzyme family.
       0.598
yfhG
Putative transcriptional regulator of two-component regulator protein; silverDB:etchr01000.
  
     0.547
ETA_03790
Type I restriction-modification system, M subunit; silverDB:etchr00379.
  
  
 0.535
hsdM
Type I restriction-modification system, methyltransferase subunit; silverDB:etchr03314.
  
  
 0.535
walW
Lipopolysaccharide biosynthesis protein; silverDB:etchr00077.
  
    0.483
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.