Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ydjRConserved hypothetical protein YdjR; silverDB:etchr02210. (180 aa)    
Predicted Functional Partners:
ETA_22210
Putative chlorohydrolase; silverDB:etchr02209.
 
    0.894
hutG
Putative N-formylglutamate amidohydrolase; silverDB:etchr02207.
 
    0.851
ETA_22230
GntR-family transcriptional regulatory protein; silverDB:etchr02211.
 
  
 0.846
hutI
Imidazolonepropionase; silverDB:etchr02208; Belongs to the metallo-dependent hydrolases superfamily. HutI family.
 
  
 0.757
hutU
Urocanate hydratase; Catalyzes the conversion of urocanate to 4-imidazolone-5- propionate.
 
  
 0.585
ycgR-2
Putative inner membrane protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
    0.452
hutH
Histidine ammonia-lyase; silverDB:etchr02212.
 
  
 0.443
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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