Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ophAABC-type dipeptide transport system, periplasmic component (OphA), DdpA region; silverDB:etchr02379. (514 aa)    
Predicted Functional Partners:
dppB
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component; silverDB:etchr02378.
 
   0.978
dppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component; silverDB:etchr02377.
 
   0.941
ETA_23880
Putative ATP-binding component of ABC transporter; silverDB:etchr02376; Belongs to the ABC transporter superfamily.
 
   0.938
ETA_23920
Homocysteine S-methyltransferase family protein; silverDB:etchr02380.
 
     0.770
ETA_25740
Putative ABC transporter permease protein; silverDB:etchr02562.
 
   0.663
yddQ
Putative ABC transporter permease protein; silverDB:etchr02563.
 
   0.661
dppC-2
Dipeptide transport system permease protein; silverDB:etchr03383.
 
   0.652
ETA_13930
ABC transporter, permease protein; silverDB:etchr01383.
 
   0.636
ETA_13920
ABC transporter, permease protein; silverDB:etchr01382.
 
   0.621
ETA_21880
Putative transport system permease protein; silverDB:etchr02176.
 
   0.609
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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