Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ETA_23920Homocysteine S-methyltransferase family protein; silverDB:etchr02380. (300 aa)    
Predicted Functional Partners:
ophA
ABC-type dipeptide transport system, periplasmic component (OphA), DdpA region; silverDB:etchr02379.
 
     0.770
dppB
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component; silverDB:etchr02378.
 
     0.712
ETA_23930
Hypothetical protein; silverDB:etchr02381.
       0.540
lysP
Lysine-specific permease; silverDB:etchr01270.
  
  
 0.516
dppC
ABC-type dipeptide/oligopeptide/nickel transport systems, permease component; silverDB:etchr02377.
  
    0.511
ETA_23880
Putative ATP-binding component of ABC transporter; silverDB:etchr02376; Belongs to the ABC transporter superfamily.
       0.486
mdeA
Methionine gamma-lyase; silverDB:etchr00841.
 
  
 0.401
ETA_34300
Putative aminotransferase; silverDB:etchr03416; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
    0.400
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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