STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
galRGalactose operon repressor; silverDB:etchr02765. (334 aa)    
Predicted Functional Partners:
galT
Galactose-1-phosphate uridylyltransferase; silverDB:etchr02266; Belongs to the galactose-1-phosphate uridylyltransferase type 1 family.
 
   
 0.695
bacA
Similar to bacitracin synthetase 1 (BA1), protein contains non-ribosomal peptide synthetase modules; silverDB:etchr02904.
    
 
 0.688
galM
Galactose 1-epimerase (Mutarotase); Converts alpha-aldose to the beta-anomer.
     
 0.687
galE
UDP-glucose 4-epimerase; silverDB:etchr01324; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
  
 
 0.686
ETA_03080
Glutamate synthase (NADPH); silverDB:etchr00307.
    
 
 0.681
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
  
  
 0.667
rpoD
Sigma D (Sigma 70) factor of RNA polymerase; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
      
 0.633
ETA_27760
Biotin sulfoxide reductase; silverDB:etchr02764; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
       0.598
galP
Galactose-proton symport (Galactose transporter); silverDB:etchr02815; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
      
 0.536
crp
Catabolite gene activator (cAMP receptor protein); silverDB:etchr03176.
    
 
 0.451
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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