Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fimDOuter membrane usher protein, FimD; silverDB:etchr02854. (875 aa)    
Predicted Functional Partners:
fimF
Minor fimbrial subunit, polypeptide (FimF); silverDB:etchr02853.
 
   0.939
fimC
Type I fimbrial chaperone; silverDB:etchr02855.
 
   0.932
fimI
FimI fimbrial protein, FimI; silverDB:etchr02856.
 
   0.881
fimA
Type-1 fimbrial protein, FimA; silverDB:etchr02857.
 
   0.871
faeE
Outer membrane usher protein; silverDB:etchr00159.
  
   0.858
ETA_06560
Pilus assembly protein, chaperone PapD; silverDB:etchr00648.
  
   0.858
mrkB
Chaperone protein (involved in the expression of type III fimbriae) MrkB; silverDB:etchr02841.
  
   0.858
ETA_28560
Probable pili assembly chaperone; silverDB:etchr02844.
  
   0.858
ETA_28800
Fimbrial chaperone; silverDB:etchr02868.
  
   0.858
bcfB
Fimbrial chaperone protein; silverDB:etchr03288.
  
   0.858
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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