Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yqjKConserved hypothetical protein YqjK; silverDB:etchr02898. (93 aa)    
Predicted Functional Partners:
yqjE
Putative membrane protein YqjE; silverDB:etchr02897.
 
  
 0.984
yqjD
Conserved hypothetical protein YqjD; silverDB:etchr02896.
 
  
 0.961
yqjC
Putative exported protein YqjC; silverDB:etchr02895.
 
  
 0.934
ompX
Virulence-related outer membrane protein X; silverDB:etchr02191.
  
     0.774
yfeC
Putative negative regulator; silverDB:etchr01099.
  
     0.773
yebY
Conserved hypothetical protein YebY; silverDB:etchr01496.
  
     0.768
ygdI-2
Putative lipoprotein YgdI; silverDB:etchr02725.
  
     0.768
yecF
Conserved hypothetical protein YecF; silverDB:etchr02067.
  
     0.763
spy
Spheroplast protein Y; silverDB:etchr01842.
  
     0.762
holE
DNA polymerase III theta subunit; silverDB:etchr01495.
  
     0.756
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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