Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ETA_29630Conserved hypothetical protein; silverDB:etchr02950. (72 aa)    
Predicted Functional Partners:
hflC
HflC protein; HflC and HflK could regulate a protease.
     
 0.805
yjbO
Similar to conserved hypothetical protein YjbO, probable fragment; silverDB:etchr03083.
  
     0.755
yecM
Hypothetical protein YecM; silverDB:etchr01466.
  
     0.729
hflK
Protease specific for phage lambda cII repressor; HflC and HflK could encode or regulate a protease.
 
   
 0.724
uspB
Universal stress protein B; silverDB:etchr03305.
  
     0.717
ETA_29490
Conserved hypothetical protein; silverDB:etchr02936.
  
     0.707
lapA
Conserved hypothetical protein (DUF1049); Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
  
     0.682
tsgA
Fucose permease TsgA; silverDB:etchr03181.
  
     0.677
ybeL
Conserved hypothetical protein YbeL; silverDB:etchr02334.
  
     0.663
ETA_11580
Conserved hypothetical protein; silverDB:etchr01149.
  
     0.655
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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