Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ETA_30160Hypothetical protein; silverDB:etchr03003. (218 aa)    
Predicted Functional Partners:
barA
Signal transduction histidine-protein kinase BarA; silverDB:etchr02713.
  
 
 0.854
pmfF
Putative minor fimbrial subunit PmfF; silverDB:etchr03004.
       0.693
pmfE
Putative minor fimbrial subunit PmfE; silverDB:etchr03005.
       0.693
pmfD
Chaperone protein PmfD; silverDB:etchr03006.
  
    0.668
arcB
Aerobic respiration control sensor protein ArcB; silverDB:etchr00308.
   
 
 0.661
ETA_30150
Hypothetical protein; silverDB:etchr03002.
       0.655
pmfC
Outer membrane usher protein PmfC; silverDB:etchr03007.
  
    0.589
bacA
Similar to bacitracin synthetase 1 (BA1), protein contains non-ribosomal peptide synthetase modules; silverDB:etchr02904.
      
 0.549
ETA_30120
ABC transporter (Peptidase C39), probable bacteriocin; silverDB:etchr02999.
  
    0.501
ETA_30050
3-oxoacyl-[acyl-carrier protein] reductase; silverDB:etchr02992.
       0.492
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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