STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psiEPhosphate-starvation-inducible E, protein PsiE; silverDB:etchr03093. (138 aa)    
Predicted Functional Partners:
ETA_03260
Anti-sigma B factor antagonist; silverDB:etchr00325.
 
     0.685
yecF
Conserved hypothetical protein YecF; silverDB:etchr02067.
  
     0.685
ETA_16810
Conserved hypothetical protein (DUF1471); silverDB:etchr01671.
  
     0.637
atpI
ATP synthase protein I; silverDB:etchr03467.
  
     0.637
holE
DNA polymerase III theta subunit; silverDB:etchr01495.
  
     0.634
yqjE
Putative membrane protein YqjE; silverDB:etchr02897.
  
     0.631
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
       0.579
ETA_34470
Putative lipoprotein; silverDB:etchr03433.
  
     0.567
ompX
Virulence-related outer membrane protein X; silverDB:etchr02191.
  
     0.557
ETA_29820
Putative lipoprotein; silverDB:etchr02969.
  
     0.549
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.