Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hofQPutative type II secretion system protein; silverDB:etchr03193. (384 aa)    
Predicted Functional Partners:
ETA_32100
Predicted fimbrial assembly protein; silverDB:etchr03196.
  
 
 0.988
ETA_32110
Conserved hypothetical protein; silverDB:etchr03197.
  
 
 0.964
ETA_32080
Hypothetical protein; silverDB:etchr03194.
       0.871
ETA_32090
Hypothetical protein; silverDB:etchr03195.
       0.871
ETA_28380
Putative type II secretion system protein; silverDB:etchr02826.
 
   
 0.810
hofC
Putative outer membrane protein export (MTB) system; silverDB:etchr00791.
 
 
 
 0.808
outO
Type IV-A prepilin peptidase PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.801
mrcA
Penicillin-binding protein 1A; silverDB:etchr03198.
     
 0.792
outF
General secretion pathway protein F (Pectic enzymes secretion protein outF); silverDB:etchr00781.
 
 
 
 0.771
outE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
 
 
 0.771
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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