Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
etfBFimbrial chaperon protein; silverDB:etchr03320. (227 aa)    
Predicted Functional Partners:
etfC
Fimbrial usher protein; silverDB:etchr03319.
 
   0.944
etfA
Major fimbrial subunit protein; silverDB:etchr03321.
 
   0.927
ETA_03850
Putative outer membrane usher protein; silverDB:etchr00385.
  
   0.858
ETA_06530
Outer membrane usher protein; silverDB:etchr00645.
  
   0.858
mrkC
Putative outer membrane fimbrial usher porin (involved in the expression of type III fimbriae) MrkC; silverDB:etchr02842.
  
   0.858
fimD
Outer membrane usher protein, FimD; silverDB:etchr02854.
  
   0.858
ETA_28790
Outer membrane usher protein, fimbrial-like; silverDB:etchr02867.
  
   0.858
ETA_33030
Outer membrane usher protein; silverDB:etchr03289.
  
   0.858
ETA_16500
Fimbrial biogenesis outer membrane usher protein; silverDB:etchr01640.
  
   0.851
mrfC-2
Outer membrane platform usher (mannose-resistance fimbriae), MrfC protein; silverDB:etchr00403.
  
   0.822
Your Current Organism:
Erwinia tasmaniensis
NCBI taxonomy Id: 465817
Other names: E. tasmaniensis Et1/99, Erwinia tasmaniensis Et1/99, Erwinia tasmaniensis str. Et1/99, Erwinia tasmaniensis strain Et1/99
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