STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KTR37857.1MFS transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (702 aa)    
Predicted Functional Partners:
KTR39000.1
Multidrug MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.482
deaD
Cold-shock protein; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation.
       0.422
Your Current Organism:
Curtobacterium oceanosedimentum
NCBI taxonomy Id: 465820
Other names: ATCC 31317, C. oceanosedimentum, Flavobacterium oceanosedimentum
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