STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_0042U-box domain protein. (237 aa)    
Predicted Functional Partners:
Lmac_1881
Protein with TPR motifs (protein-protein interaction motif).
   
  0.768
Lmac_2409
7-dehydrocholesterol reductase.
  
 
   0.724
degP
DegP protease (Do-like, S2-serine-like).
  
 
  0.661
Lmac_0571
Thaumatin domain-containing protein.
  
 
   0.661
Lmac_0041
Dot/Icm secretion system substrate.
   
  0.659
Lmac_3048
SET domain protein.
  
 
  0.628
Lmac_1018
Hypothetical protein.
    
  0.579
Lmac_1586
Acid phosphatase, class B.
  
     0.560
Lmac_0037
Rho GTPase (Miro-like).
  
 
  0.547
Lmac_2173
Phosphoprotein phosphatase.
  
 
  0.500
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.