STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_0389D-Ala-D-Ala carboxypeptidase. (476 aa)    
Predicted Functional Partners:
dacB
D-alanyl-D-alanine carboxypeptidase.
  
  
 
0.690
dacA
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.
     
 0.667
bioC_2
Biotin synthase; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway.
       0.540
Lmac_0390
Phenylalanine-4-hydroxylase.
       0.506
Lmac_2334
Muramoyltetrapeptide carboxypeptidase.
 
   
 0.425
Lmac_2227
Ankyrin repeats (3 copies).
  
 
   0.412
Lmac_0309
Glycosyl hydrolase.
  
  
 0.410
Lmac_1639
Ankyrin repeat protein.
  
 
   0.409
Lmac_2930
N-acetyl-beta-glucosaminidase.
  
  
 0.409
Lmac_0138
N-acetyl-beta-glucosaminidase.
  
  
 0.408
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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