STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_0494Polysaccharide biosynthesis protein; Belongs to the DegT/DnrJ/EryC1 family. (369 aa)    
Predicted Functional Partners:
Lmac_0449
Oxidoreductase.
 
 
 0.881
Lmac_0284
Chloramphenicol acetyltransferase.
 
 0.857
pyrF
Orotidine 5`-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
       0.798
Lmac_0587
Capsular polysaccharide biosynthesis protein CapD and UDP-glucose 4-epimerase.
 
 
 0.793
Lmac_1279
Peptide synthetase, non-ribosomal.
  
 0.779
pksJ
Polyketide synthase, type I.
  
 0.751
Lmac_0492
Bacteriophage-like DNA polymerase.
       0.729
Lmac_0491
Tfp type 4 fimbrial pilin like signal peptide protein domain protein.
       0.723
Lmac_2148
Polyketide synthase module.
  
 0.706
Lmac_0490
Hypothetical protein.
       0.698
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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