STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabDSuccinate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. (455 aa)    
Predicted Functional Partners:
fmt
Methionyl tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
 
      0.880
pksJ
Polyketide synthase, type I.
  
 0.857
Lmac_2148
Polyketide synthase module.
  
 0.826
Lmac_2147
Acetyltransferase.
  
 0.811
Lmac_0768
Bifunctional PutA protein; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
 
0.807
fadH
2,4-dienoyl-CoA reductase FadH1.
  
 0.803
Lmac_0594
Putative ErfK/YbiS/YcfS/YnhG protein.
       0.798
Lmac_2711
Polyketide synthase module.
  
 0.797
Lmac_1430
Non-ribosomal peptide synthetase/polyketide synthetase.
    
 0.792
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 0.791
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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