STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_0646High-affinity nickel-transport protein; Belongs to the NiCoT transporter (TC 2.A.52) family. (232 aa)    
Predicted Functional Partners:
Lmac_0647
Cation transport ATPase.
       0.684
oxdC
Oxalate decarboxylase OxdC.
  
     0.626
egl
Endoglucanase precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.584
hypB
Hydrogenase nickel incorporation protein HypB.
  
  
 0.471
Lmac_0645
Ankyrin repeats (3 copies).
       0.432
hypA
Hydrogenase nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
     
 0.430
Lmac_0207
Amino acid permease family protein.
  
     0.421
Lmac_0886
TQO small subunit DoxD.
  
     0.401
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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