STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pipB2_2Secreted effector protein pipB2. (1013 aa)    
Predicted Functional Partners:
Lmac_2614
Protein IcmE (DotG).
  
     0.767
ribA_2
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
     
  0.572
Lmac_0884
Regulatory protein (GGDEF and EAL domains).
    
 0.563
cyaA
Fused adenylate cyclase/two component hybrid sensor/regulator.
     
  0.548
pksJ
Polyketide synthase, type I.
 
 
 
 0.489
tdcB
L-threonine dehydratase catabolic TdcB.
       0.409
dotC
Defect in organelle trafficking lipoprotein DotC.
    
 
 0.406
dotD
Lipoprotein DotD.
    
 
 0.406
Lmac_2667
IcmK protein.
   
 
 0.406
Lmac_2669
Protein IcmG (DotF).
   
 
 0.404
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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