Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lmac_1063 | Lmac_1064 | Lmac_1063 | Lmac_1064 | Putative aminoglycoside phosphotransferase. | Transmembrane protein. | 0.798 |
| Lmac_1063 | ltaE | Lmac_1063 | Lmac_1062 | Putative aminoglycoside phosphotransferase. | Low specificity L-threonine aldolase. | 0.793 |
| Lmac_1064 | Lmac_1063 | Lmac_1064 | Lmac_1063 | Transmembrane protein. | Putative aminoglycoside phosphotransferase. | 0.798 |
| Lmac_1064 | ltaE | Lmac_1064 | Lmac_1062 | Transmembrane protein. | Low specificity L-threonine aldolase. | 0.793 |
| Lmac_2148 | cysK | Lmac_2148 | Lmac_3088 | Polyketide synthase module. | Cystathionine beta synthase. | 0.570 |
| Lmac_2148 | gcvPB | Lmac_2148 | Lmac_3145 | Polyketide synthase module. | Putative glycine dehydrogenase [decarboxylating] subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.552 |
| Lmac_2148 | gcvT | Lmac_2148 | Lmac_3141 | Polyketide synthase module. | Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine. | 0.789 |
| Lmac_2148 | glyA | Lmac_2148 | Lmac_0426 | Polyketide synthase module. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.801 |
| Lmac_2148 | ltaE | Lmac_2148 | Lmac_1062 | Polyketide synthase module. | Low specificity L-threonine aldolase. | 0.690 |
| Lmac_2148 | tdcB | Lmac_2148 | Lmac_0883 | Polyketide synthase module. | L-threonine dehydratase catabolic TdcB. | 0.617 |
| cysK | Lmac_2148 | Lmac_3088 | Lmac_2148 | Cystathionine beta synthase. | Polyketide synthase module. | 0.570 |
| cysK | glyA | Lmac_3088 | Lmac_0426 | Cystathionine beta synthase. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.746 |
| cysK | ltaE | Lmac_3088 | Lmac_1062 | Cystathionine beta synthase. | Low specificity L-threonine aldolase. | 0.680 |
| cysK | tdcB | Lmac_3088 | Lmac_0883 | Cystathionine beta synthase. | L-threonine dehydratase catabolic TdcB. | 0.755 |
| gcsA | gcvPB | Lmac_3143 | Lmac_3145 | Glycine dehydrogenase subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | Putative glycine dehydrogenase [decarboxylating] subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.999 |
| gcsA | gcvT | Lmac_3143 | Lmac_3141 | Glycine dehydrogenase subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | Glycine cleavage system T protein; The glycine cleavage system catalyzes the degradation of glycine. | 0.999 |
| gcsA | glyA | Lmac_3143 | Lmac_0426 | Glycine dehydrogenase subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.838 |
| gcsA | ltaE | Lmac_3143 | Lmac_1062 | Glycine dehydrogenase subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | Low specificity L-threonine aldolase. | 0.700 |
| gcvPB | Lmac_2148 | Lmac_3145 | Lmac_2148 | Putative glycine dehydrogenase [decarboxylating] subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | Polyketide synthase module. | 0.552 |
| gcvPB | gcsA | Lmac_3145 | Lmac_3143 | Putative glycine dehydrogenase [decarboxylating] subunit 2; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | Glycine dehydrogenase subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.999 |
page 1 of 3