STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fis_2Global DNA-binding transcriptional dual regulator; Belongs to the transcriptional regulatory Fis family. (93 aa)    
Predicted Functional Partners:
Lmac_0186
Nitrogen regulation protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.822
Lmac_0117
GGDEF domain-containing sensory box protein.
    
 
 0.720
Lmac_0884
Regulatory protein (GGDEF and EAL domains).
    
 
 0.631
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.595
Lmac_2075
Rtn protein.
    
   0.583
sspA
Stringent starvation protein A; Belongs to the GST superfamily.
  
   
 0.567
yjbN
tRNA-dihydrouridine synthase A; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.535
dedE
Colicin V.
  
     0.533
Lmac_0408
Outer membrane protein TolC.
  
     0.496
Lmac_1095
Putative membrane protein YdgA-like protein.
       0.490
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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