Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Lmac_1138 | Lmac_1140 | Lmac_1138 | Lmac_1140 | HIT family hydrolase. | Hypothetical protein. | 0.421 |
Lmac_1138 | Lmac_2148 | Lmac_1138 | Lmac_2148 | HIT family hydrolase. | Polyketide synthase module. | 0.434 |
Lmac_1138 | Lmac_2713 | Lmac_1138 | Lmac_2713 | HIT family hydrolase. | Hypothetical protein. | 0.581 |
Lmac_1138 | deaD | Lmac_1138 | Lmac_0113 | HIT family hydrolase. | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.438 |
Lmac_1138 | folE | Lmac_1138 | Lmac_1139 | HIT family hydrolase. | GTP cyclohydrolase I. | 0.783 |
Lmac_1138 | hdaH | Lmac_1138 | Lmac_1549 | HIT family hydrolase. | Histone deacetylase-like amidohydrolase. | 0.434 |
Lmac_1138 | ppa | Lmac_1138 | Lmac_1137 | HIT family hydrolase. | Inorganic pyrophosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions. | 0.569 |
Lmac_1138 | rhlE | Lmac_1138 | Lmac_1918 | HIT family hydrolase. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.438 |
Lmac_1138 | rpoC | Lmac_1138 | Lmac_1177 | HIT family hydrolase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.573 |
Lmac_1138 | rpoZ | Lmac_1138 | Lmac_2578 | HIT family hydrolase. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.536 |
Lmac_1140 | Lmac_1138 | Lmac_1140 | Lmac_1138 | Hypothetical protein. | HIT family hydrolase. | 0.421 |
Lmac_1140 | folE | Lmac_1140 | Lmac_1139 | Hypothetical protein. | GTP cyclohydrolase I. | 0.429 |
Lmac_2148 | Lmac_1138 | Lmac_2148 | Lmac_1138 | Polyketide synthase module. | HIT family hydrolase. | 0.434 |
Lmac_2148 | deaD | Lmac_2148 | Lmac_0113 | Polyketide synthase module. | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | 0.822 |
Lmac_2148 | folE | Lmac_2148 | Lmac_1139 | Polyketide synthase module. | GTP cyclohydrolase I. | 0.505 |
Lmac_2148 | rhlE | Lmac_2148 | Lmac_1918 | Polyketide synthase module. | ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family. | 0.822 |
Lmac_2713 | Lmac_1138 | Lmac_2713 | Lmac_1138 | Hypothetical protein. | HIT family hydrolase. | 0.581 |
Lmac_2713 | rpoC | Lmac_2713 | Lmac_1177 | Hypothetical protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.934 |
Lmac_2713 | rpoZ | Lmac_2713 | Lmac_2578 | Hypothetical protein. | RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.994 |
deaD | Lmac_1138 | Lmac_0113 | Lmac_1138 | ATP-dependent RNA helicase; DEAD-box RNA helicase involved in various cellular processes at low temperature, including ribosome biogenesis, mRNA degradation and translation initiation. | HIT family hydrolase. | 0.438 |
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