Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lmac_1340ABC transporter permease. (257 aa)    
Predicted Functional Partners:
Lmac_1341
ABC transporter ATP binding protein.
 
 0.989
Lmac_1339
Hypothetical protein.
       0.738
Lmac_0293
Nitroreductase.
  
  
 0.725
Lmac_1342
2OG-Fe(II) oxygenase.
       0.666
Lmac_1370
ABC transporter ATP-binding protein.
  
 
 0.648
pksJ
Polyketide synthase, type I.
     
 0.644
Lmac_1343
Zinc metalloprotease.
       0.641
Lmac_1430
Non-ribosomal peptide synthetase/polyketide synthetase.
     
 0.563
ftsE
Cell division ATP transporter FtsE; Part of the ABC transporter FtsEX involved in cellular division.
  
 
 0.542
Lmac_1344
Hypothetical protein.
       0.500
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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