Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cbbLRibulose bisphosphate carboxylase large chain; Belongs to the RuBisCO large chain family. (377 aa)    
Predicted Functional Partners:
Lmac_1367
Transferase.
    
 
 0.834
fucA
L-fuculose phosphate aldolase.
  
 
 0.833
mtnA
Methylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
  
 
 0.756
Lmac_1377
MobA-like NTP transferase domain protein.
 
     0.662
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.629
Lmac_1060
HAD-superfamily hydrolase.
    
  0.613
Lmac_2607
Phosphatase.
     
  0.589
udk
Uridine kinase.
    
 0.492
Lmac_1379
LicD family protein (phosphorylcholine metabolism).
       0.465
Lmac_1380
Hypothetical protein.
       0.465
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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