Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_1625Putative transmembrane protein. (305 aa)    
Predicted Functional Partners:
Lmac_1626
Hypothetical protein.
 
     0.946
Lmac_1624
ABC transporter permease.
  
 0.942
ttg2D
Toluene tolerance protein Ttg2D.
 
 0.878
ttg2A
Toluene tolerance ABC transporter ATP binding protein Ttg2A.
  
 0.808
Lmac_1969
ABC transporter ATP binding protein.
  
 0.808
ttg2B
Toluene tolerance protein Ttg2B.
  
 0.770
Lmac_1970
ABC transporter permease.
  
 0.770
Lmac_1967
Transport protein.
  
  0.641
Lmac_1432
Outer membrane protein.
  
     0.635
Lmac_0581
Putative anti-sigma-B factor antagonist (Anti-anti-sigma-B factor).
  
 0.622
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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