Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_1626Hypothetical protein. (199 aa)    
Predicted Functional Partners:
Lmac_1625
Putative transmembrane protein.
 
     0.946
Lmac_1624
ABC transporter permease.
       0.866
Lmac_0182
Hypothetical protein.
  
     0.593
Lmac_0178
KQDN repeat-containing protein.
  
     0.574
Lmac_0179
TPR repeat containing protein.
  
     0.541
Lmac_0684
Hypothetical protein.
  
     0.470
Lmac_1623
Hypothetical protein.
       0.463
Lmac_1627
Silver efflux pump.
       0.457
Lmac_0180
Hypothetical protein.
  
     0.433
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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