Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_1671Hypothetical protein. (1000 aa)    
Predicted Functional Partners:
Lmac_1672
Hypothetical protein.
 
 
 0.988
Lmac_1669
Hypothetical protein.
 
  
 0.974
Lmac_1674
Hypothetical protein.
 
 
 0.959
Lmac_1673
Hypothetical protein.
 
   
 0.948
Lmac_1676
Hypothetical protein.
 
   
 0.947
Lmac_1670
Hypothetical protein.
 
     0.946
capM2
CapM protein, capsular polysaccharide biosynthesis.
 
     0.939
Lmac_1881
Protein with TPR motifs (protein-protein interaction motif).
   
 0.808
Lmac_2436
PAS fold protein.
   
 0.781
ribA_2
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.627
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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