STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_1677NAD-dependent epimerase/dehydratase. (311 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase, type I.
  
 0.917
capM2
CapM protein, capsular polysaccharide biosynthesis.
 
 
  0.817
Lmac_1672
Hypothetical protein.
       0.773
Lmac_1673
Hypothetical protein.
       0.773
Lmac_1674
Hypothetical protein.
   
   0.773
Lmac_1676
Hypothetical protein.
       0.773
Lmac_1678
CMP-N-acetylneuraminate monooxygenase.
       0.773
Lmac_1430
Non-ribosomal peptide synthetase/polyketide synthetase.
  
 0.767
Lmac_2148
Polyketide synthase module.
  
 0.756
rpsQ
30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
  0.699
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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