STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_1701Oxidoreductase. (239 aa)    
Predicted Functional Partners:
Lmac_1702
L-gululonolactone oxidase.
 
     0.969
pksJ
Polyketide synthase, type I.
  
 0.956
Lmac_2148
Polyketide synthase module.
  
 0.871
Lmac_0585
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Belongs to the UbiA prenyltransferase family.
 
    0.785
Lmac_2147
Acetyltransferase.
   
 0.778
Lmac_2711
Polyketide synthase module.
  
 0.756
Lmac_1430
Non-ribosomal peptide synthetase/polyketide synthetase.
  
 0.747
Lmac_1812
Peptide synthetase, non-ribosomal.
 
  
 0.627
Lmac_1429
Peptide synthetase, non-ribosomal.
 
 
 0.619
Lmac_1703
Flagellar protein.
 
     0.582
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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