STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_1843FAD dependent oxidoreductase. (540 aa)    
Predicted Functional Partners:
Lmac_2148
Polyketide synthase module.
  
 0.719
petC_2
Cytochrome b6-f complex iron-sulfur subunit.
  
 
 0.639
bioC_1
Biotin synthase BioC.
  
  
  0.638
oxdC
Oxalate decarboxylase OxdC.
 
     0.612
Lmac_2157
Dioxygenase, ferredoxin subunit.
  
  
  0.604
egl
Endoglucanase precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.573
Lmac_1812
Peptide synthetase, non-ribosomal.
    
 0.536
pksJ
Polyketide synthase, type I.
  
 0.527
Lmac_1409
Putative methyltransferase.
  
  
  0.514
Lmac_1299
Trans-aconitate 2-methyltransferase.
  
 
  0.512
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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