Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
chiA1Chitinase A1 precursor. (503 aa)    
Predicted Functional Partners:
Lmac_2001
Hypothetical protein.
   
 0.885
Lmac_0309
Glycosyl hydrolase.
     
 0.862
Lmac_2930
N-acetyl-beta-glucosaminidase.
     
 0.782
Lmac_2302
Sensor histidine kinase.
  
     0.763
Lmac_2304
Two component response regulator.
  
     0.761
parB_3
Putative chromosome-partitioning protein ParB.
  
     0.759
Lmac_1909
LuxR family transcriptional regulator.
 
   
 0.758
Lmac_2280
Conjugal transfer mating pair stabilization protein TraN.
  
   
 0.739
Lmac_2287
Putative conjugative transfer protein TraB.
  
     0.733
Lmac_2308
Initiator Replication protein.
  
     0.722
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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