Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lmac_1924Hypothetical protein. (224 aa)    
Predicted Functional Partners:
dlpA_1
DlpA protein (isocitrate and isopropylmalate dehydrogenase family protein).
    
  0.841
Lmac_1927
Hypothetical protein.
       0.813
Lmac_1923
4-hydroxy-2-oxovalerate aldolase.
   
  0.810
dlpA_2
DlpA protein (isocitrate and isopropylmalate dehydrogenase family protein).
       0.692
Lmac_2004
Erythromycin esterase.
   
    0.642
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.586
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase protein.
     
 0.586
Lmac_1264
Phospholipase/carboxylesterase.
     
 0.540
Lmac_1922
UDP-N-acetylmuramyl tripeptide synthase.
       0.526
Lmac_3037
Hypothetical protein.
   
 
 0.431
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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