STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dlpA_2DlpA protein (isocitrate and isopropylmalate dehydrogenase family protein). (219 aa)    
Predicted Functional Partners:
Lmac_1927
Hypothetical protein.
 
     0.879
dlpA_1
DlpA protein (isocitrate and isopropylmalate dehydrogenase family protein).
      0.853
Lmac_1924
Hypothetical protein.
       0.704
Lmac_2443
Glucosamine-6-phosphate deaminase-like protein.
    
 0.697
kdsD
Arabinose 5-phosphate isomerase.
    
  0.674
oxdC
Oxalate decarboxylase OxdC.
  
  
  0.667
Lmac_1923
4-hydroxy-2-oxovalerate aldolase.
 
   
 0.655
Lmac_0058
Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
    
 0.651
Lmac_0695
D-ribulose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
    
  0.632
rhlE
ATP-dependent RNA helicase RhlE; Belongs to the DEAD box helicase family.
   
 
 0.540
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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