Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Lmac_0944 | Lmac_2025 | Lmac_0944 | Lmac_2025 | DNA-binding protein. | Coiled-coil protein. | 0.482 |
| Lmac_0944 | rplJ | Lmac_0944 | Lmac_1174 | DNA-binding protein. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.631 |
| Lmac_0944 | rplW | Lmac_0944 | Lmac_1216 | DNA-binding protein. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.898 |
| Lmac_0944 | rpmC | Lmac_0944 | Lmac_1222 | DNA-binding protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.898 |
| Lmac_2025 | Lmac_0944 | Lmac_2025 | Lmac_0944 | Coiled-coil protein. | DNA-binding protein. | 0.482 |
| Lmac_2025 | pksJ | Lmac_2025 | Lmac_2149 | Coiled-coil protein. | Polyketide synthase, type I. | 0.610 |
| Lmac_2025 | polA | Lmac_2025 | Lmac_3154 | Coiled-coil protein. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.660 |
| Lmac_2025 | rplJ | Lmac_2025 | Lmac_1174 | Coiled-coil protein. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.510 |
| Lmac_2025 | rplW | Lmac_2025 | Lmac_1216 | Coiled-coil protein. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.487 |
| Lmac_2025 | rpmC | Lmac_2025 | Lmac_1222 | Coiled-coil protein. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.476 |
| Lmac_2025 | secB | Lmac_2025 | Lmac_2611 | Coiled-coil protein. | Protein-export protein SecB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.890 |
| Lmac_2025 | secE | Lmac_2025 | Lmac_1170 | Coiled-coil protein. | Preprotein translocase secE subunit; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family. | 0.754 |
| Lmac_2025 | secG | Lmac_2025 | Lmac_1163 | Coiled-coil protein. | Protein-export membrane protein secG (preprotein translocase subunit); Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.803 |
| Lmac_2025 | secY | Lmac_2025 | Lmac_1234 | Coiled-coil protein. | Preprotein translocase subunit SecY; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.904 |
| pksJ | Lmac_2025 | Lmac_2149 | Lmac_2025 | Polyketide synthase, type I. | Coiled-coil protein. | 0.610 |
| pksJ | polA | Lmac_2149 | Lmac_3154 | Polyketide synthase, type I. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.709 |
| pksJ | rplJ | Lmac_2149 | Lmac_1174 | Polyketide synthase, type I. | 50S ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. | 0.472 |
| pksJ | rplW | Lmac_2149 | Lmac_1216 | Polyketide synthase, type I. | 50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. | 0.537 |
| pksJ | rpmC | Lmac_2149 | Lmac_1222 | Polyketide synthase, type I. | 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family. | 0.509 |
| polA | Lmac_2025 | Lmac_3154 | Lmac_2025 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Coiled-coil protein. | 0.660 |
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