STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbO_2Oxidoreductase with NAD(P)-binding Rossmann-fold domain protein. (263 aa)    
Predicted Functional Partners:
pksJ
Polyketide synthase, type I.
  
 0.894
Lmac_1430
Non-ribosomal peptide synthetase/polyketide synthetase.
  
 0.883
Lmac_2148
Polyketide synthase module.
  
 0.874
Lmac_2029
Hypothetical protein.
       0.779
Lmac_2028
Transporter, permease.
       0.773
Lmac_2147
Acetyltransferase.
  
 0.760
Lmac_2756
Non-ribosomal peptide synthetase; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 0.747
Lmac_1279
Peptide synthetase, non-ribosomal.
  
 0.741
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.716
fadB
3-hydroxyacyl CoA dehydrogenase oxidoreductase protein.
  
 0.716
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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