Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_2040Hypothetical protein. (157 aa)    
Predicted Functional Partners:
Lmac_2041
Putative transcriptional regulator (helix-turn-helix motif, XRE-like).
 
    0.946
fitA
Antitoxin FitA.
 
 
 
 0.787
Lmac_2042
Hypothetical protein.
 
     0.524
Lmac_2043
Hypothetical protein.
 
     0.508
Lmac_1912
Hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
   
   0.488
Lmac_2039
Hypothetical protein.
       0.402
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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