STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_2157Dioxygenase, ferredoxin subunit. (117 aa)    
Predicted Functional Partners:
coxB
Cytochrome c oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
    
  0.647
fadH
2,4-dienoyl-CoA reductase FadH1.
     
 0.621
Lmac_1843
FAD dependent oxidoreductase.
  
  
  0.604
Lmac_2907
Sulfurylase ThiF.
  
 
 0.602
cycA
Cytochrome c.
    
  0.580
Lmac_2059
Ankyrin repeats (3 copies).
  
     0.539
Lmac_0571
Thaumatin domain-containing protein.
  
     0.532
Lmac_1639
Ankyrin repeat protein.
  
     0.517
Lmac_2686
FAD dependent oxidoreductase.
  
  
  0.501
glnA
Glutamine synthetase.
     
 0.490
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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