STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_2328MerR family transcriptional regulator. (346 aa)    
Predicted Functional Partners:
rpoD
RNA polymerase sigma 70 factor (RpoD); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.906
Lmac_1019
Inner membrane protein/sensory box protein LssE.
    
 0.765
Lmac_0884
Regulatory protein (GGDEF and EAL domains).
   
 0.743
Lmac_0117
GGDEF domain-containing sensory box protein.
   
 0.733
Lmac_0703
Regulatory protein (GGDEF and EAL domains).
    
 0.725
Lmac_1132
Inner membrane protein.
    
 0.725
Lmac_1711
Sensory box protein (GGDEF domain/EAL domain).
    
 0.725
queF-2
GTP cyclohydrolase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
  
  
 
0.691
Lmac_1260
Regulatory protein (GGDEF domain).
    
 0.680
Lmac_2833
NUDIX hydrolase.
   
    0.646
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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