STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_2420RND efflux membrane fusion protein. (328 aa)    
Predicted Functional Partners:
Lmac_2419
Multidrug efflux protein, outer membrane component.
 
  0.990
Lmac_2421
Toxin secretion ABC transporter HlyB/MsbA family transporter ATP-binding protein.
  0.986
Lmac_2424
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.821
Lmac_2422
LysR family transporter transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.771
Lmac_2425
Hypothetical protein.
 
     0.725
Lmac_2718
Outer membrane efflux protein.
  
  0.720
Lmac_0408
Outer membrane protein TolC.
   
  0.703
Lmac_2423
NADH dehydrogenase subunit 5.
       0.678
Lmac_3066
Hypothetical protein.
  
     0.604
Lmac_0194
Hemolysin D; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
  0.554
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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