STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilEtype-IV pilin. (144 aa)    
Predicted Functional Partners:
Lmac_0335
Fimbrial protein, type IV pilin, PilE; Belongs to the N-Me-Phe pilin family.
 
  
 0.832
pilN
Tfp pilus assembly protein PilN.
 
  
 0.820
Lmac_2454
Coiled-coil protein.
       0.798
Lmac_1204
Hypothetical protein.
  
  
 0.791
pilO
Tfp pilus assembly protein PilO.
 
   
 0.717
pilM
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.705
pilQ
Type IV pilus (Tfp) assembly protein PilQ.
 
   
 0.677
lspG
Type II secretory pathway protein LspG.
    
 0.675
lidA
Dot/Icm system substrate protein LidA.
       0.644
lspJ
Type II secretory pathway protein LspJ.
    
 0.618
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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