Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_2668Protein IcmE (DotG). (1085 aa)    
Predicted Functional Partners:
Lmac_2667
IcmK protein.
 
 
 
 0.993
dotC
Defect in organelle trafficking lipoprotein DotC.
  
 
 
 0.983
Lmac_2669
Protein IcmG (DotF).
   
 
 0.975
dotA
Defect in organelle trafficking protein DotA.
  
 
   0.969
lphA
LphA (DotK).
 
 
 
 0.958
Lmac_2666
Protein IcmL (DotI).
 
   
 0.957
Lmac_2673
Protein IcmB (DotO).
 
 0.957
dotD
Lipoprotein DotD.
    
 
 0.934
Lmac_2672
IcmJ protein.
 
   
 0.911
icmX
Intracellular multiplication protein IcmX.
    
 
 0.904
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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