STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_2670IcmC (DotE). (191 aa)    
Predicted Functional Partners:
Lmac_2669
Protein IcmG (DotF).
     
 0.887
icmD
Protein IcmD (DotP).
     
 0.883
Lmac_2666
Protein IcmL (DotI).
     
 0.863
Lmac_2667
IcmK protein.
     
 0.858
icmM/dotJ
Component of the Dot/Icm secretion system, predicted inner membrane protein.
     
 0.836
Lmac_2668
Protein IcmE (DotG).
     
 0.807
lphA
LphA (DotK).
       0.804
Lmac_2672
IcmJ protein.
     
 0.726
icmP
IcmP protein.
     
 0.693
Lmac_2663
Protein IcmO (DotL).
     
 0.675
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.