Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Lmac_2719Protein with a bacterial immunoglobulin-like domain protein. (881 aa)    
Predicted Functional Partners:
Lmac_2720
Hypothetical protein.
       0.664
Lmac_2716
ABC transporter ATP-binding protein.
       0.574
Lmac_2717
Membrane-fusion protein AcrA.
       0.574
Lmac_2718
Outer membrane efflux protein.
       0.574
trxA3
Thioredoxin; Belongs to the thioredoxin family.
    
   0.546
trxA
Thioredoxin; Belongs to the thioredoxin family.
    
   0.546
Lmac_2723
Xaa-Pro aminopeptidase.
       0.497
ubiH_1
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.490
ubiH_2
2-octaprenyl-6-methoxyphenol hydroxylase.
       0.490
Lmac_2724
Hypothetical protein; Belongs to the UPF0149 family.
       0.454
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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