Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_2728TnpA transposase. (351 aa)    
Predicted Functional Partners:
Lmac_1853
Transposase (IS652).
 
     0.752
Lmac_1426
Hypothetical protein.
  
     0.572
Lmac_1506
Hypothetical protein.
  
     0.567
Lmac_2367
Coiled-coil protein.
  
     0.561
Lmac_1255
Ankyrin repeats (3 copies).
  
     0.530
Lmac_1053
Hypothetical protein.
  
     0.522
iraA
Small-molecule methyltransferase IraA.
  
     0.518
Lmac_0724
Inner membrane protein AmpE.
  
     0.496
Lmac_2729
Hypothetical protein.
       0.473
Lmac_3079
Coiled-coil protein.
  
     0.419
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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