STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Lmac_3016Hypothetical protein. (334 aa)    
Predicted Functional Partners:
Lmac_3015
Hypothetical protein.
 0.999
hddA
D-glycero-alpha-D-manno-heptose 7-phosphate kinase.
 
     0.861
pheA
Prephenate dehydratase.
    
  0.799
yvfE_1
Cell wall biosynthesis regulatory pyridoxal phosphate-dependent protein; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.795
Lmac_0695
D-ribulose-5-phosphate-3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
 
 
 0.786
rfbF_1
Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase).
 
     0.775
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
  0.770
Lmac_3020
NAD dependent epimerase/dehydratase family protein.
 
     0.760
tkt
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
  
 
 0.724
kdsD
Arabinose 5-phosphate isomerase.
    
  0.721
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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