STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Cooccurrence
Coexpression
Experiments
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[Homology]
Score
yvfE_2Cell wall biosynthesis regulatory pyridoxal phosphate-dependent protein; Belongs to the DegT/DnrJ/EryC1 family. (408 aa)    
Predicted Functional Partners:
Lmac_0587
Capsular polysaccharide biosynthesis protein CapD and UDP-glucose 4-epimerase.
 
 
 0.840
rfbF_2
Glucose-1-phosphate cytidylyltransferase (CDP-glucose pyrophosphorylase).
 
    0.802
rfbG
CDP-glucose 4,6-dehydratase.
 
 
 0.784
Lmac_0284
Chloramphenicol acetyltransferase.
 
 
 0.685
pksJ
Polyketide synthase, type I.
  
 
 0.673
Lmac_3031
NAD-dependent epimerase/dehydratase.
 
 
  0.671
Lmac_3032
Glycosyl transferase, group 2 family protein.
 
  
 0.660
Lmac_0449
Oxidoreductase.
 
 
 0.641
Lmac_3000
CDP-6-deoxy-delta-3,4-glucoseen reductase.
   
 
  0.578
Lmac_0675
dTDP-6-deoxy-D-glucose-3,5-epimerase RmlC; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
 0.524
Your Current Organism:
Legionella maceachernii
NCBI taxonomy Id: 466
Other names: ATCC 35300, CCUG 31116, CIP 103846, DSM 16642, JCM 7566, L. maceachernii, NCTC 11982, Tatlockia maceachernii, strain Px-1-G-2-E2
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